The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Identifieur interne : 000116 ( Main/Exploration ); précédent : 000115; suivant : 000117The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Auteurs :Source :
- Nature Microbiology [ 2058-5276 ] ; 2020.
Descripteurs français
- KwdFr :
- Animaux, Cadres ouverts de lecture, Classification (), Coronaviridae (), Coronaviridae (génétique), Génome viral, Humains, Infections à coronavirus (transmission), Infections à coronavirus (virologie), Infections à coronavirus (épidémiologie), Nidovirales (), Nidovirales (génétique), Organisation mondiale de la santé, Pandémies, Phylogénie, Pneumopathie virale (transmission), Pneumopathie virale (virologie), Pneumopathie virale (épidémiologie), Syndrome respiratoire aigu sévère (virologie), Syndrome respiratoire aigu sévère (épidémiologie), Terminologie comme sujet, Variation génétique, Virus du SRAS (), Virus du SRAS (génétique), Zoonoses.
- MESH :
- génétique : Coronaviridae, Nidovirales, Virus du SRAS.
- virologie : Infections à coronavirus, Pneumopathie virale, Syndrome respiratoire aigu sévère.
- épidémiologie : Infections à coronavirus, Pneumopathie virale, Syndrome respiratoire aigu sévère.
- Animaux, Cadres ouverts de lecture, Classification, Coronaviridae, Génome viral, Humains, Nidovirales, Organisation mondiale de la santé, Pandémies, Phylogénie, Terminologie comme sujet, Variation génétique, Virus du SRAS, Zoonoses.
English descriptors
- KwdEn :
- Animals, Betacoronavirus (classification), Betacoronavirus (genetics), Classification (methods), Coronaviridae (classification), Coronaviridae (genetics), Coronavirus Infections (epidemiology), Coronavirus Infections (transmission), Coronavirus Infections (virology), Genetic Variation, Genome, Viral, Humans, Nidovirales (classification), Nidovirales (genetics), Open Reading Frames, Pandemics, Phylogeny, Pneumonia, Viral (epidemiology), Pneumonia, Viral (transmission), Pneumonia, Viral (virology), SARS Virus (classification), SARS Virus (genetics), Severe Acute Respiratory Syndrome (epidemiology), Severe Acute Respiratory Syndrome (virology), Terminology as Topic, World Health Organization, Zoonoses.
- MESH :
- classification : Betacoronavirus, Coronaviridae, Nidovirales, SARS Virus.
- epidemiology : Coronavirus Infections, Pneumonia, Viral, Severe Acute Respiratory Syndrome.
- genetics : Betacoronavirus, Coronaviridae, Nidovirales, SARS Virus.
- methods : Classification.
- transmission : Coronavirus Infections, Pneumonia, Viral.
- virology : Coronavirus Infections, Pneumonia, Viral, Severe Acute Respiratory Syndrome.
- Animals, Genetic Variation, Genome, Viral, Humans, Open Reading Frames, Pandemics, Phylogeny, Terminology as Topic, World Health Organization, Zoonoses.
Abstract
The present outbreak of a coronavirus-associated acute respiratory disease called coronavirus disease 19 (COVID-19) is the third documented spillover of an animal coronavirus to humans in only two decades that has resulted in a major epidemic. The
Url:
DOI: 10.1038/s41564-020-0695-z
PubMed: NONE
PubMed Central: 7095448
Affiliations:
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Le document en format XML
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level="a" type="main">The species <italic>Severe acute respiratory syndrome-related coronavirus</italic>: classifying 2019-nCoV and naming it SARS-CoV-2</title></analytic><series><title level="j">Nature Microbiology</title><idno type="eISSN">2058-5276</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Betacoronavirus (classification)</term><term>Betacoronavirus (genetics)</term><term>Classification (methods)</term><term>Coronaviridae (classification)</term><term>Coronaviridae (genetics)</term><term>Coronavirus Infections (epidemiology)</term><term>Coronavirus Infections (transmission)</term><term>Coronavirus Infections (virology)</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Humans</term><term>Nidovirales (classification)</term><term>Nidovirales (genetics)</term><term>Open Reading 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santé</term><term>Pandémies</term><term>Phylogénie</term><term>Pneumopathie virale (transmission)</term><term>Pneumopathie virale (virologie)</term><term>Pneumopathie virale (épidémiologie)</term><term>Syndrome respiratoire aigu sévère (virologie)</term><term>Syndrome respiratoire aigu sévère (épidémiologie)</term><term>Terminologie comme sujet</term><term>Variation génétique</term><term>Virus du SRAS ()</term><term>Virus du SRAS (génétique)</term><term>Zoonoses</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Betacoronavirus</term><term>Coronaviridae</term><term>Nidovirales</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Coronavirus Infections</term><term>Pneumonia, Viral</term><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Betacoronavirus</term><term>Coronaviridae</term><term>Nidovirales</term><term>SARS 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xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Humans</term><term>Open Reading Frames</term><term>Pandemics</term><term>Phylogeny</term><term>Terminology as Topic</term><term>World Health Organization</term><term>Zoonoses</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Cadres ouverts de lecture</term><term>Classification</term><term>Coronaviridae</term><term>Génome viral</term><term>Humains</term><term>Nidovirales</term><term>Organisation mondiale de la santé</term><term>Pandémies</term><term>Phylogénie</term><term>Terminologie comme sujet</term><term>Variation génétique</term><term>Virus du SRAS</term><term>Zoonoses</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">The present outbreak of a coronavirus-associated acute respiratory disease called coronavirus disease 19 (COVID-19) is the third documented spillover of an animal coronavirus to humans in only two decades that has resulted in a major epidemic. The <italic>Coronaviridae</italic> Study Group (CSG) of the International Committee on Taxonomy of Viruses, which is responsible for developing the classification of viruses and taxon nomenclature of the family <italic>Coronaviridae</italic>, has assessed the placement of the human pathogen, tentatively named 2019-nCoV, within the <italic>Coronaviridae</italic>. Based on phylogeny, taxonomy and established practice, the CSG recognizes this virus as forming a sister clade to the prototype human and bat severe acute respiratory syndrome coronaviruses (SARS-CoVs) of the species <italic>Severe acute respiratory syndrome-related coronavirus</italic>, and designates it as SARS-CoV-2. In order to facilitate communication, the CSG proposes to use the following naming convention for individual isolates: SARS-CoV-2/host/location/isolate/date. While the full spectrum of clinical manifestations associated with SARS-CoV-2 infections in humans remains to be determined, the independent zoonotic transmission of SARS-CoV and SARS-CoV-2 highlights the need for studying viruses at the species level to complement research focused on individual pathogenic viruses of immediate significance. This will improve our understanding of virus–host interactions in an ever-changing environment and enhance our preparedness for future outbreaks.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Krammer, F" uniqKey="Krammer F">F Krammer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zheng, Dp" uniqKey="Zheng D">DP Zheng</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Adams, Mj" uniqKey="Adams M">MJ Adams</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gorbalenya, A E" uniqKey="Gorbalenya A">A.E. Gorbalenya</name></author><author><name sortKey="Lauber, C" uniqKey="Lauber C">C. Lauber</name></author><author><name sortKey="Siddell, S" uniqKey="Siddell S">S. 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Snijder</name></author><author><name sortKey="Bredenbeek, Peter J" uniqKey="Bredenbeek P">Peter J. Bredenbeek</name></author><author><name sortKey="Dobbe, Jessika C" uniqKey="Dobbe J">Jessika C. Dobbe</name></author><author><name sortKey="Thiel, Volker" uniqKey="Thiel V">Volker Thiel</name></author><author><name sortKey="Ziebuhr, John" uniqKey="Ziebuhr J">John Ziebuhr</name></author><author><name sortKey="Poon, Leo L M" uniqKey="Poon L">Leo L.M. Poon</name></author><author><name sortKey="Guan, Yi" uniqKey="Guan Y">Yi Guan</name></author><author><name sortKey="Rozanov, Mikhail" uniqKey="Rozanov M">Mikhail Rozanov</name></author><author><name sortKey="Spaan, Willy J M" uniqKey="Spaan W">Willy J.M. Spaan</name></author><author><name sortKey="Gorbalenya, Alexander E" uniqKey="Gorbalenya A">Alexander E. 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uniqKey="Tang B">B Tang</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kuhn, Jh" uniqKey="Kuhn J">JH Kuhn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Forni, D" uniqKey="Forni D">D Forni</name></author><author><name sortKey="Cagliani, R" uniqKey="Cagliani R">R Cagliani</name></author><author><name sortKey="Clerici, M" uniqKey="Clerici M">M Clerici</name></author><author><name sortKey="Sironi, M" uniqKey="Sironi M">M Sironi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nijhuis, Rht" uniqKey="Nijhuis R">RHT Nijhuis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Siddell, Sg" uniqKey="Siddell S">SG 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sortKey="Wang, W" uniqKey="Wang W">W Wang</name></author><author><name sortKey="Qin, X C" uniqKey="Qin X">X-C Qin</name></author><author><name sortKey="Holmes, Ec" uniqKey="Holmes E">EC Holmes</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Corman, Vm" uniqKey="Corman V">VM Corman</name></author><author><name sortKey="Muth, D" uniqKey="Muth D">D Muth</name></author><author><name sortKey="Niemeyer, D" uniqKey="Niemeyer D">D Niemeyer</name></author><author><name sortKey="Drosten, C" uniqKey="Drosten C">C Drosten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gonzalez, Jm" uniqKey="Gonzalez J">JM González</name></author><author><name sortKey="Gomez Puertas, P" uniqKey="Gomez Puertas P">P Gomez-Puertas</name></author><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author><author><name sortKey="Gorbalenya, Ae" uniqKey="Gorbalenya A">AE 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